Now that Akari Mizunashi is a Prima Undine and head of the Aria Company with her own apprentice, Ai Aino, she can't help but reminisce about her time as a Single. She has new responsibilities and much less time on her hands, but these changes bring with them new forms of miracles that Neo Venezia can give. Growing up into new roles is hard, but Akari can always count on the friends she's made on Aqua in times of need.

The movie starts off after the events of Episode 3, when Kisaragi had sunk. The Mikawa Fleet (Furutaka, Aoba, Kako, Kinugasa and Tenryuu) are in the middle of Night Battle. Choukai uses Searchlight and gets medium damage, but they win in the end. A New Fleet Girl gets "dropped", emerging from the sea. It is Kisaragi. Kisaragi is brought back to the temporary base in Solomon Islands, but she is suffering from PTSD and has amnesia, unable to remember anyone from back in the anime, excluding Mutsuki...