One day, Tomonaga Takashi, a medical representative of pharmaceutical company Tenei Seiyaku, is suddenly suspected of molesting inside a train by male and female strangers. He has an important appointment and tries to get away. However, Nitta Masato, who rushed over from the police box in front of the train station where he had been on duty, arrests Tomonaga as he fights back. This is Nitta’s first achievement as a new police officer.

The Gaiark Pollution Ministers begin setting up their plan break the dimensional barriers that separate the Braneworlds in order to create their Gaiark haven, setting up the opening sequences for the actual movie. However, while the Go-ongers are trapped in Samurai World, the Ministers attempt to take advantage of the event by subduing Bomper, who battles them personally when they attempt to set a trap for the Go-ongers as they return to their dimension.

Taking place 10 years after the Go-Onger fought the Gaiark, unprecedented peace has come to the Human World thanks to The Minister of Defense Noizumi's Isolation Barrier. But because of this, it severed the connections between the Go-Ongers and the Engines. Plus, due to the Sentai Activity Ban Law, the Go-Ongers are labelled as terrorists! Amidst that, a mysterious young boy named Souji appears to them with BeaRV's Engine Cast. Sosuke / Go-On Red and the rest save him as he was being pursued by the special police. For some reason, one standing in their way is Saki / Go-On Yellow, who parted ways with the Go-Ongers and has become part of the governments public relations office. The major incident will drag the world in and how will it involve the fate of the Go-Ongers?!

A year after defeating Yogoshimacritein, the Go-Ongers head to the wild western realm of Gunman World to defeat Gaiark's Pollution President Batcheed in a final confrontation. However, after defeating Engine-Oh G9, Batcheed opens up a dimensional rift that sucks the Go-Ongers and Engines to other Braneworlds. Soon after, while finding themselves fighting Ugatz, the Shinkengers encounter Go-On Red as he helps take out the Ugatz on his own, much to the Shinkengers' shock.

The Space Empire Zangyack forms an alliance with the Black Cross King, the resurrected form of the Gorengers' enemy the Black Cross Führer, in order to invade Earth with other revived Super Sentai enemies. The Gokaigers, along with the Goseigers, who have lost their powers from the Legend War, must team up in order to fight against the new enemy.

The story begins when Geki Red battles Nunchaku Banki after returning from his trip around the world for Natsume's birthday, with Geki Yellow and Geki Blue arriving to provide backup. After sending the Gekirangers into another dimension, the Go-ongers arrive before the Savage Machine Beast departs after his quarry. After clearing a misunderstanding with Geki Violet and Geki Chopper, the two bring them to SCRTC to see Master Xia Fu, with Hant revealing he met Miki at one of his past jobs at the Kyoryuya Curry Shop.

A special DVD in which Bomper lets each of the Go-Ongers do their own special seminar on ecology and also tie into the three Gaiark Pollution Ministers.

DVD release of the live stage show featuring Engine Sentai Go-Onger in 2009.

The Go-Ongers intercept the Recycle Barbaric Machine Beast Army in their Engines, managing to scrap the 13. However, trio of mysterious warriors appear and their actions result in the Go-Ongers losing the primary Engine Casts while being sucked into the Braneworld known as Samurai World, a dimension similar to Edo Japan where power is essential.

The Gokaigers embark on a quest to find the ghost ship that harbors the legendary God Eye, which grants any wish to whoever wields it. During their adventure, they must face Los Dark, the captain of the ghost ship, and a host of revived enemies of the previous Super Sentai teams such as Agent Abrella and Baseball Mask.