Long ago, the legends say, there was a secret army. Unseen until needed, these warriors struck from the shadows, protecting justice and defending the Jushin Empire from both tyrants and thieves. They were called the Amen Osa, the Phantom Masters. But now Jushin has fallen, its kingdoms destroyed and its citizens left to the mercy of zombies, beasts and sadists. Yet from the ashes of destruction, a hero has appeared to defend the people. His name is unknown, and no man knows who he serves... but there are clues: the strange symbol he wears around his neck and the female living weapon he commands. Is he the last of the Amen Osa? The answer will be revealed when the Blade of the Phantom Master is unleashed!

Five children save the life of a dog-like alien while at a self-run summer camp. He attempts to reward them by taking them to an alien colony on the Moon. Events take a turn for the worse when his report on that attack that injured him causes passage from the Moon to the Earth to be banned, and children are stranded in space. The children need to find a way back home before camp ends and their parents discover that they are missing. They also have to avoid the poachers that injured their alien friend, and now seem to be stalking them all.

Suzu is a 17-year-old high-school student living in a rural town with her father. Wounded by the loss of her mother at a young age, Suzu one day discovers the massive online world "U" and dives into this alternate reality as her avatar, Belle. Before long, all of U's eyes are fixed on Belle, when, suddenly, a mysterious, dragon-like figure appears before her.

Zorori, Ishishi, and Noshishi, while out searching for treasure, come upon a town with a widespread illness. In order to make the secret medicine for it, they must set out on an adventure.

Kankichi Ryotsu is sulking after his bonus was snatched away by the members of the shopping district. On TV, they hear that Princess Sabrina of the Attakaino Kingdom is coming to Japan. While making a delivery, Ryotsu encounters a kidnapping incident. The girl he rescues from the kidnapper is Princess Sabrina! The kidnapping case develops into a major commotion that involves the downtown area! Will Ryotsu be able to protect the downtown area and everyone there?

Kaitou Kid dares to challenge the police once more, setting his sights on the Russian Imperial Easter Egg. With the date, time, and place, the Osaka police force scrambles to stop him. But this time, Kid may have bitten off more than he can chew—Conan Edogawa, Heiji Hattori, and numerous others are also trying to get their hands on the jeweled egg.

Mitsumasa Kido discovers a misterious baby in the himalayas whom he adopts as his grandaughter. 16 years later, Saori Kido is a young girl troubled by her mysterious powers. She is saved by Seiya from an assassin sent to kill her. Saori then learns she is the reincarnation of the Goddess Athena with Seiya being one of her Saints sworn to protect her. Upon learning of her destiny, she heads to the Sanctuary to rebel against the Pope's murderous plot.

Ayato and Haruka are middle-school sweethearts whose lives take a dire turn when the mysterious Mu invade Tokyo in the year 2012. Protecting humanity from the Mu may be Ayato's destiny, but what he really wants is to regain the relationship he once had with Haruka... a love that will have to transcend space, time, and reality itself.

In the year 2029, the barriers of our world have been broken down by the net and by cybernetics, but this brings new vulnerability to humans in the form of brain-hacking. When a highly-wanted hacker known as 'The Puppetmaster' begins involving them in politics, Section 9, a group of cybernetically enhanced cops, are called in to investigate and stop the Puppetmaster.