When a rogue science experiment starts filling the world with crystallized Noise, a group of rebels strike back to reunite the world with its Music.

As Shinsei Inazuma Japan was about to have a match with Inazuma Legend Japan, a mysterious attack of a person and a swarm of robots interrupted, and another mysterious girl's power drove the world into another dimension. As the world of Inazuma Eleven Go and Danball Senki W met, the two teams must work together to find out what happened to their worlds.